diff --git a/CHANGELOG.md b/CHANGELOG.md index 29220e0..498ca11 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -4,7 +4,7 @@ Each release's binaries and full notes are on the [releases page](https://github.com/DylanCosto/bonefish/releases). "Output" means the alignment records. Each entry quotes the MD5 of the genome-wide HG001 sample's SAM output, `@PG` lines removed. -## v0.3.0 (unreleased) +## v0.3.0 (2026-10-21) **New: `-x tx`.** The preset maps direct RNA or cDNA to a transcriptome for quantifiers such as oarfish and NanoCount (minimap2 `-ax map-ont -N 100`). diff --git a/CITATION.cff b/CITATION.cff index 5ee6e24..fa4c35d 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -5,7 +5,7 @@ type: software authors: - family-names: Costo given-names: Dylan -version: 0.2.0 +version: 0.3.0 date-released: 2026-10-21 license: MIT repository-code: "https://github.com/DylanCosto/bonefish" diff --git a/Cargo.lock b/Cargo.lock index 45550e3..f138ef0 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -96,7 +96,7 @@ checksum = "843867be96c8daad0d758b57df9392b6d8d271134fce549de6ce169ff98a92af" [[package]] name = "bonefish" -version = "0.2.0" +version = "0.3.0" dependencies = [ "anyhow", "bonefish-core", @@ -111,7 +111,7 @@ dependencies = [ [[package]] name = "bonefish-core" -version = "0.2.0" +version = "0.3.0" dependencies = [ "anyhow", "bincode", diff --git a/Cargo.toml b/Cargo.toml index 70d21fc..72c5803 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -3,7 +3,7 @@ resolver = "2" members = ["bonefish-core", "bonefish"] [workspace.package] -version = "0.2.0" +version = "0.3.0" edition = "2024" license = "MIT" repository = "https://github.com/DylanCosto/bonefish" diff --git a/bonefish/Cargo.toml b/bonefish/Cargo.toml index c25297b..b4ea472 100644 --- a/bonefish/Cargo.toml +++ b/bonefish/Cargo.toml @@ -24,7 +24,7 @@ jemalloc = ["dep:tikv-jemallocator"] mimalloc = ["dep:mimalloc"] [dependencies] -bonefish-core = { path = "../bonefish-core", version = "0.2.0", default-features = false } +bonefish-core = { path = "../bonefish-core", version = "0.3.0", default-features = false } clap = { version = "4", features = ["derive"] } env_logger = "0.11" log = "0.4"