diff --git a/packaging/bioconda/meta.yaml b/packaging/bioconda/meta.yaml index 7658e0a..77cf231 100644 --- a/packaging/bioconda/meta.yaml +++ b/packaging/bioconda/meta.yaml @@ -1,5 +1,5 @@ {% set name = "bonefish" %} -{% set version = "0.3.0" %} +{% set version = "0.4.0" %} package: name: {{ name }} @@ -7,7 +7,7 @@ package: source: url: https://github.com/DylanCosto/bonefish/archive/refs/tags/v{{ version }}.tar.gz - sha256: 98fea115e84246742e60dcd4133a59b806df4150497d5435b72451029355fe91 + sha256: ecc8c637fc57e382e0578da0e9b2fca4b58c96de510856a98d137ae61dae64d2 build: number: 0 @@ -34,13 +34,14 @@ about: license_file: - LICENSE - THIRDPARTY.yml - summary: Fast aligner for Oxford Nanopore DNA, direct RNA and cDNA reads, with minimap2-level accuracy. + summary: Fast aligner for long reads (Oxford Nanopore DNA, direct RNA and cDNA; PacBio HiFi), with minimap2-level accuracy. description: | - bonefish aligns Oxford Nanopore reads (FASTQ, FASTA or dorado BAM) to a reference and - writes SAM, PAF or a coordinate-sorted, indexed BAM. Genomic DNA uses minimap2's lr:hq + bonefish aligns Oxford Nanopore and PacBio HiFi reads (FASTQ, FASTA or dorado BAM) to a + reference and writes SAM, PAF or a coordinate-sorted, indexed BAM. Genomic DNA uses minimap2's lr:hq seeding and scoring with cheaper chaining and alignment, validated against GIAB truth sets; direct RNA and cDNA (-x rna, -x cdna) use minimap2's spliced presets with faster intron - alignment, validated against minimap2, GENCODE and simulated reads. + alignment, validated against minimap2, GENCODE and simulated reads; PacBio HiFi genomic DNA + (-x hifi) is validated against GIAB truth sets and minimap2 map-hifi. dev_url: https://github.com/DylanCosto/bonefish doc_url: https://github.com/DylanCosto/bonefish/blob/main/docs/tutorial.md