Issues

• Missing reformat Binary File

  bedapub/besca#386 · Filter by author GUOYF0412 opened on Nov 9, 2025

• bc.tl.rc.recluster() seems to calculate HVG from previous ones

  bedapub/besca#384 · Filter by author llumdi opened on Aug 18, 2025

• The dependent versions of anndata and scipy are too old

  bedapub/besca#381 · Filter by author falsetry1514 opened on Apr 22, 2025
  2

• seaborn jointplot fails if passing multiple positional arguments

  bedapub/besca#369 · Filter by author bhoellbacher opened on Nov 7, 2024

• bc.st.clr_normalize() fails

  bedapub/besca#367 · Filter by author bhoellbacher opened on Nov 6, 2024

• Issue with sig.read_annotconfig in cell_type

  bedapub/besca#363 · Filter by author GretaBordinETH opened on Oct 7, 2024

• besca installation failure

  bedapub/besca#347 · Filter by author Silencewu7 opened on Aug 10, 2024
  1

• error in bc.pl.riverplot_2categories() figsize param with besca253

  bug
  bedapub/besca#346 · Filter by author llumdi opened on Jun 5, 2024

• percent_mito in reality reflects the fraction not the pct

  enhancementinvalid
  bedapub/besca#345 · Filter by author llumdi opened on Jun 4, 2024

• Issue with tl.annotate_cells_cluster function

  bedapub/besca#344 · Filter by author prasadm1k opened on May 30, 2024

• new 10x mtx version

  bedapub/besca#342 · Filter by author wangjiawen2013 opened on Mar 25, 2024
  1

• high memory consumption and nonetype error

  bedapub/besca#341 · Filter by author wangjiawen2013 opened on Mar 21, 2024

• LFS quota exceeded

  bedapub/besca#323 · Filter by author idavydov opened on Aug 31, 2023
  27

• Allow flavor selection in bc.st.highly_variable_genes()

  enhancementstd workflow
  bedapub/besca#320 · Filter by author llumdi opened on Aug 22, 2023
  

• Move to poetry as a dependency manager

  bedapub/besca#317 · Filter by author kohleman opened on Aug 8, 2023

• use_raw=False not working in bc.tl.sig.combined_signature_score( )

  bug
  bedapub/besca#312 · Filter by author llumdi opened on Jul 18, 2023

• env yaml file

  bedapub/besca#298 · Filter by author schmucr1 opened on Jun 1, 2023
  2

• Storing public data sets in installation directory is problematic

  bedapub/besca#272 · Filter by author schmucr1 opened on Jan 4, 2023

• KeyError: 'base' when using bc.tl.dge.get_de() or bc.st.additional_labeling()

  bug
  bedapub/besca#271 · Filter by author llumdi opened on Dec 14, 2022
  3

  

• Remove duplicated log messages

  bedapub/besca#265 · Filter by author kohleman opened on Nov 15, 2022
  2

  

• Upgrading plot functions with axes

  enhancementgood first issue
  bedapub/besca#188 · Filter by author ajulienla opened on Dec 20, 2021

• figure size for celllabel_quant_stackedbar

  enhancement
  bedapub/besca#181 · Filter by author marlisese opened on Nov 1, 2021
  1

• Additional parameters min_fract_pos and min_cells_per_group in perform_dge()

  enhancement
  bedapub/besca#180 · Filter by author llumdi opened on Oct 25, 2021

• Getting started guide and interactive notebooks

  documentationfor future
  bedapub/besca#177 · Filter by author hatjek opened on Oct 8, 2021

• Pending improvements in the Silhouette Computation function

  enhancement
  bedapub/besca#171 · Filter by author alberto-valdeolivas opened on Aug 17, 2021