Issues

• AF-MSA download error

  google-deepmind/alphafold#1137 · Filter by author Yogesh1-11 opened on Aug 24, 2026
  4

• Best GPU for local AlphaFold

  google-deepmind/alphafold#1125 · Filter by author David458-alt opened on Apr 30, 2026
  1

• Conserved backbone–H-bond coupling angles in secondary structures correlate with pLDDT

  google-deepmind/alphafold#1122 · Filter by author 0x-auth opened on Apr 2, 2026
  2

• RTX PRO 6000 /SM_120 incompatibility

  google-deepmind/alphafold#1121 · Filter by author kpetrov opened on Mar 13, 2026
  2

• Hydrogen atoms in RNA or DNA

  google-deepmind/alphafold#1117 · Filter by author turtlecrk opened on Feb 18, 2026
  4

• error running with a nvidia rtx pro 4500/5000

  google-deepmind/alphafold#1113 · Filter by author SaberLi110 opened on Jan 13, 2026
  2

• Some previously accessible protein IDs are no longer searchable in the AlphaFold database

  google-deepmind/alphafold#1112 · Filter by author lh12565 opened on Jan 12, 2026
  3

• Bulk Download of MSA Files from AlphaFold DB

  google-deepmind/alphafold#1111 · Filter by author hughplay opened on Jan 12, 2026
  4

• Any plans for a new AlphaFold release?

  google-deepmind/alphafold#1097 · Filter by author xuagu37 opened on Oct 12, 2025

• GPU time on Kubernetes

  google-deepmind/alphafold#1094 · Filter by author sashalarsoo opened on Oct 6, 2025
  3

• No template found for CYS residue.

  google-deepmind/alphafold#1093 · Filter by author Farah-Nazir opened on Sep 19, 2025
  1

• Integrate Large Language Model (LLM) Capabilities for Enhanced Protein Structure Analysis

  google-deepmind/alphafold#1092 · Filter by author justynigam opened on Sep 15, 2025

• error running with a nvidia blackwell RTX5090

  google-deepmind/alphafold#1085 · Filter by author ocstx opened on Jun 6, 2025
  7

• Multimer ipTM big variance among five models

  google-deepmind/alphafold#1082 · Filter by author yifeng-evo opened on Apr 28, 2025

• failed connection to uniprot

  google-deepmind/alphafold#1077 · Filter by author mavino opened on Mar 31, 2025

• parallelization opportunity

  google-deepmind/alphafold#1075 · Filter by author matthewabrown opened on Mar 26, 2025

• Trying to run ALpha Fold Initial Guess.

  google-deepmind/alphafold#1074 · Filter by author Jetzu opened on Mar 23, 2025

• Docker calls ascend NPU and fails to start

  google-deepmind/alphafold#1073 · Filter by author yuqing886 opened on Mar 12, 2025

• Using 2.0 weights on 2.2 code

  google-deepmind/alphafold#1072 · Filter by author jmoojun opened on Mar 10, 2025

• Based on equation 46 in Supplementary Info, should the clash loss be divided by number of atoms?

  google-deepmind/alphafold#1071 · Filter by author tsjain opened on Mar 6, 2025

• pairwise attention code?

  google-deepmind/alphafold#1069 · Filter by author KantaManta opened on Feb 28, 2025
  1

• Question about 20A distance scale for interface fape

  google-deepmind/alphafold#1068 · Filter by author tsjain opened on Feb 26, 2025

• docker.errors.DockerException: Error while fetching server API version: Not supported URL scheme http+docker

  google-deepmind/alphafold#1066 · Filter by author Moricant opened on Feb 4, 2025
  4

• RuntimeError: jaxlib version 0.4.38 is newer than and incompatible with jax version 0.4.26. Please update your jax and/or jaxlib packages.

  google-deepmind/alphafold#1065 · Filter by author Sana-Dilbar opened on Feb 4, 2025
  2

• setting --gpu_device is not working for mutiple GPUs

  google-deepmind/alphafold#1063 · Filter by author menghaowei opened on Feb 2, 2025
  3