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Update dependency protobuf to v36 #210

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Job	Run time
nix flake check	2m 28s
Maven tests (JDK 17)	4m 56s
Bazel (scip-java)	3m 8s
Maven tests (JDK 21)	4m 38s
Bazel (bazel-example)	3m 14s
Snapshots	4m 37s
Tests (JDK 21)	8m 10s
Tests (JDK 25)	8m 25s
Maven tests (JDK 25)	4m 39s
bazel_aspect	5m 43s
Tests (JDK 17)	6m 47s
Nix pass	2s
	56m 47s