DeCeccoLAB

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1. QIIME2-MultiRegion-Microbiome-Pipeline QIIME2-MultiRegion-Microbiome-Pipeline Public

   R 1

2. hacksig hacksig Public

   Forked from Acare/hacksig

   A Tidy Framework to Hack Gene Expression Signatures

   R

3. Clinical-and-Demographic-Metadata-of-the-INT77-20-Pediatric-Oncology-Cohort Clinical-and-Demographic-Metadata-of-the-INT77-20-Pediatric-Oncology-Cohort Public

   Clinical and demographic metadata for 104 stool samples in the INT77/20 study, including patient–caregiver pairs, replicates, and mock communities. Data cover group, age, sex, diagnosis, tumor site…

4. cfDNA-ONT cfDNA-ONT Public

   Raw signals were basecalled with Dorado and aligned to hg38.p13 using minimap2. Tumor fraction and CNVs were estimated with HMMcopy and ichorCNA. Motif analysis extracted the first four 5′ nucleoti…

   Python

5. oncoplot-Sposito oncoplot-Sposito Public

   Materials and script used to generate the oncoplot of identified variants in the study cohort.

   R

6. Viral-miRNA-EBV Viral-miRNA-EBV Public

   This repository contains the official code and data for the article XXX. Here you will find all the datasets we used (as ready‑to‑use matrices) along with the R scripts required to reproduce our an…

   R