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Merged
DylanCosto merged 1 commit into from
Oct 28, 2026
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Bioconda recipe: v0.4.0 #32

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13 changes: 7 additions & 6 deletions packaging/bioconda/meta.yaml
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Original file line number Diff line number Diff line change
@@ -1,13 +1,13 @@
{% set name = "bonefish" %}
{% set version = "0.3.0" %}
{% set version = "0.4.0" %}

package:
name: {{ name }}
version: {{ version }}

source:
url: https://github.com/DylanCosto/bonefish/archive/refs/tags/v{{ version }}.tar.gz
sha256: 98fea115e84246742e60dcd4133a59b806df4150497d5435b72451029355fe91
sha256: ecc8c637fc57e382e0578da0e9b2fca4b58c96de510856a98d137ae61dae64d2

build:
number: 0
Expand All @@ -34,13 +34,14 @@ about:
license_file:
- LICENSE
- THIRDPARTY.yml
summary: Fast aligner for Oxford Nanopore DNA, direct RNA and cDNA reads, with minimap2-level accuracy.
summary: Fast aligner for long reads (Oxford Nanopore DNA, direct RNA and cDNA; PacBio HiFi), with minimap2-level accuracy.
description: |
bonefish aligns Oxford Nanopore reads (FASTQ, FASTA or dorado BAM) to a reference and
writes SAM, PAF or a coordinate-sorted, indexed BAM. Genomic DNA uses minimap2's lr:hq
bonefish aligns Oxford Nanopore and PacBio HiFi reads (FASTQ, FASTA or dorado BAM) to a
reference and writes SAM, PAF or a coordinate-sorted, indexed BAM. Genomic DNA uses minimap2's lr:hq
seeding and scoring with cheaper chaining and alignment, validated against GIAB truth sets;
direct RNA and cDNA (-x rna, -x cdna) use minimap2's spliced presets with faster intron
alignment, validated against minimap2, GENCODE and simulated reads.
alignment, validated against minimap2, GENCODE and simulated reads; PacBio HiFi genomic DNA
(-x hifi) is validated against GIAB truth sets and minimap2 map-hifi.
dev_url: https://github.com/DylanCosto/bonefish
doc_url: https://github.com/DylanCosto/bonefish/blob/main/docs/tutorial.md

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