Issues

• Support ambiguous amino acids

  althonos/pyrodigal#82 · Filter by author schorlton-bugseq opened on Oct 20, 2026

• Genes with internal stop codons predicted from ambiguous bases

  enhancement
  althonos/pyrodigal#80 · Filter by author JeanMainguy opened on Mar 6, 2026

• Add RBS feature line

  enhancement
  althonos/pyrodigal#78 · Filter by author tseemann opened on Jan 9, 2026
  1

• Pyrodigal misses a valid CDS in the input FASTA file

  external
  althonos/pyrodigal#75 · Filter by author hbucqp opened on Dec 4, 2025
  1

• Incorporating a pyrrolysine-encoding translation table (34) into pyrodigal

  enhancement
  althonos/pyrodigal#74 · Filter by author apcamargo opened on Nov 27, 2025
  1

• corresponding ORF not called in different isolates despite identical sequence

  external
  althonos/pyrodigal#68 · Filter by author 0xaf1f opened on Dec 28, 2024

• Support for circular sequences

  enhancement
  althonos/pyrodigal#67 · Filter by author apcamargo opened on Dec 13, 2024
  1

• support detection of RBS across linear chromosome breakpoint ?

  enhancement
  althonos/pyrodigal#65 · Filter by author gbouras13 opened on Dec 11, 2024
  20

• Enforce start codon in pyrodigal ORF prediction

  enhancement
  althonos/pyrodigal#64 · Filter by author LanderDC opened on Dec 4, 2024
  3

• add ORGANISM label to GBK output

  question
  althonos/pyrodigal#45 · Filter by author GeoMicroSoares opened on Sep 27, 2023
  1

• selenoproteins?

  question
  althonos/pyrodigal#43 · Filter by author mallen6 opened on Sep 15, 2023
  2

• different result comparing to prodigal

  question
  althonos/pyrodigal#42 · Filter by author zzsunday opened on Sep 4, 2023
  3

• Inconsistent start score computed for some genes

  bug
  althonos/pyrodigal#19 · Filter by author althonos opened on Oct 21, 2022
  1