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Raman Lab of UChicago

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  1. SpectralInference.jl SpectralInference.jl Public

    Spectral [phenotype/phylogenetic] Inference package

    Julia 1 1

  2. SPI.jl SPI.jl Public

    Julia

  3. NewickTreeTools.jl NewickTreeTools.jl Public

    Julia

  4. Doran_etal_2022 Doran_etal_2022 Public

    Analyses for "An evolution-based framework for describing human gut bacteria"

    Jupyter Notebook

  5. spipy spipy Public

    Python tools for spectral inference

    Python

  6. Doran_etal_2023 Doran_etal_2023 Public

    Curated code repository, reproducing analyses from "Subspecies phylogeny in the human gut revealed by coevolutionary constraints across the bacterial kingdom"

    Jupyter Notebook

Repositories

Showing 10 of 11 repositories
  • Pandey_et_al_2026 Public

    Repository containing the LRBM Framework, trained models, and data across different modalities

    aramanlab/Pandey_et_al_2026's past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 0 Updated Aug 18, 2026
  • TumorSPACE.jl Public

    Network Statistical Inference Modeling of Tumor Spatial Transcriptomics Data

    aramanlab/TumorSPACE.jl's past year of commit activity
    Julia 0 BSD-3-Clause 0 0 25 Updated Dec 11, 2025
  • Oliveira_et_al_2024 Public

    Statistical design of a synthetic bacterial community that clears a multi-drug resistant gut pathogen

    aramanlab/Oliveira_et_al_2024's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 14, 2025
  • Behera_etal_2025 Public

    Create Figures from the Behera et al 2025 Manuscript

    aramanlab/Behera_etal_2025's past year of commit activity
    R 0 CC-BY-4.0 0 0 0 Updated Aug 24, 2025
  • Doran_etal_2023 Public

    Curated code repository, reproducing analyses from "Subspecies phylogeny in the human gut revealed by coevolutionary constraints across the bacterial kingdom"

    aramanlab/Doran_etal_2023's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 18, 2025
  • SpectralInference.jl Public

    Spectral [phenotype/phylogenetic] Inference package

    aramanlab/SpectralInference.jl's past year of commit activity
    Julia 1 BSD-3-Clause 1 0 0 Updated Jun 4, 2024
  • Oliveira_et_al_2024_V_Demo Public

    Statistical design of a synthetic bacterial community that clears a multi-drug resistant gut pathogen [V2]

    aramanlab/Oliveira_et_al_2024_V_Demo's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 28, 2024
  • Doran_etal_2022 Public

    Analyses for "An evolution-based framework for describing human gut bacteria"

    aramanlab/Doran_etal_2022's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 25, 2024
  • SPI.jl Public
    aramanlab/SPI.jl's past year of commit activity
    Julia 0 BSD-3-Clause 0 0 2 Updated Nov 29, 2023
  • spipy Public

    Python tools for spectral inference

    aramanlab/spipy's past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Nov 29, 2023
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