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Funke lab

Janelia Research Campus

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  1. gunpowder gunpowder Public

    A library to facilitate machine learning on multi-dimensional images.

    Python 93 61

  2. lsd lsd Public

    🌈

    Python 70 43

  3. motile motile Public

    Multi-Object Tracking with Integer Linear Equations

    Python 40 6

  4. daisy daisy Public

    Block-wise task scheduling for large nD volumes.

    Python 33 18

  5. cellulus cellulus Public

    Unsupervised Instance Segmentation in Microscopy

    Python 27 5

  6. linajea linajea Public

    Python 19 6

Repositories

Showing 10 of 86 repositories
  • spatial_graph Public

    A spatial graph datastructure for python

    funkelab/spatial_graph's past year of commit activity
    Python 11 MIT 2 7 2 Updated Sep 9, 2026
  • funtracks Public

    A data model for cell tracking with actions, undo history, and more!

    funkelab/funtracks's past year of commit activity
    Python 4 BSD-3-Clause 1 33 4 Updated Sep 9, 2026
  • quac Public

    Quantitative Attributions with Counterfactuals

    funkelab/quac's past year of commit activity
    Python 4 MIT 3 7 2 Updated Sep 7, 2026
  • finn Public

    finn is (not) napari

    funkelab/finn's past year of commit activity
    Python 4 BSD-3-Clause 2 0 3 Updated Sep 7, 2026
  • motile_toolbox Public

    A toolbox for tracking with motile, including constructing candidate graphs and computing common features.

    funkelab/motile_toolbox's past year of commit activity
    Python 4 2 2 7 Updated Sep 7, 2026
  • gunpowder Public

    A library to facilitate machine learning on multi-dimensional images.

    funkelab/gunpowder's past year of commit activity
    Python 93 MIT 61 10 1 Updated Sep 7, 2026
  • daisy Public

    Block-wise task scheduling for large nD volumes.

    funkelab/daisy's past year of commit activity
    Python 33 MIT 18 8 1 Updated Sep 2, 2026
  • quac_experiments Public

    Experiments for the QuAC method

    funkelab/quac_experiments's past year of commit activity
    Python 1 0 4 0 Updated Aug 13, 2026
  • tarflow Public Forked from apple/ml-tarflow
    funkelab/tarflow's past year of commit activity
    Python 1 MIT 35 0 1 Updated Aug 10, 2026
  • morphix Public
    funkelab/morphix's past year of commit activity
    Python 1 MIT 0 0 0 Updated Jul 29, 2026
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