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Updating workflows/microbiome/mags-building from 0.7 to 0.8 - #1349

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planemo-autoupdate:workflows/microbiome/mags-building
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gxydevbot wants to merge 1 commit into
galaxyproject:mainfrom
planemo-autoupdate:workflows/microbiome/mags-building

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Hello! This is an automated update of the following workflow: workflows/microbiome/mags-building. I created this PR because I think one or more of the component tools are out of date, i.e. there is a newer version available on the ToolShed.

By comparing with the latest versions available on the ToolShed, it seems the following tools are outdated:

  • toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_text_file_with_recurring_lines/9.5+galaxy3 should be updated to toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_text_file_with_recurring_lines/9.11+galaxy0
  • toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.5+galaxy3 should be updated to toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.11+galaxy0

The workflow release number has been updated from 0.7 to 0.8.

If you want to skip this change, close this PR without deleting the branch. It will be reopened if another change is detected.
Any commit from another author than 'planemo-autoupdate' will prevent more auto-updates.
To ignore manual changes and allow autoupdates, delete the branch.

@gxydevbot gxydevbot changed the title Updating workflows/microbiome/mags-building from 0.7 to 0.8 Updating workflows/microbiome/mags-building from 0.7 to 0.8 Aug 31, 2026
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gxydevbot force-pushed the workflows/microbiome/mags-building branch from 6327fa1 to d1a1996 Compare August 31, 2026 12:45
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There are new updates, they have been integrated to the PR, check the file diff.

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gxydevbot force-pushed the workflows/microbiome/mags-building branch from d1a1996 to 17fc22c Compare September 7, 2026 11:20
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There are new updates, they have been integrated to the PR, check the file diff.

@gxydevbot
gxydevbot force-pushed the workflows/microbiome/mags-building branch from 17fc22c to bb18361 Compare September 21, 2026 12:04
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There are new updates, they have been integrated to the PR, check the file diff.

@gxydevbot
gxydevbot force-pushed the workflows/microbiome/mags-building branch from bb18361 to d3846c1 Compare October 5, 2026 15:21
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There are new updates, they have been integrated to the PR, check the file diff.

@gxydevbot
gxydevbot force-pushed the workflows/microbiome/mags-building branch from d3846c1 to 2b4cc56 Compare October 19, 2026 11:32
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There are new updates, they have been integrated to the PR, check the file diff.

@SantaMcCloud

SantaMcCloud commented Oct 19, 2026 •

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This PR can be ignored. After #1380 is merged i will manually update this WF and will update the tools

I will close it when i open the PR to the whole update

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There are new updates, they have been integrated to the PR, check the file diff.

@gxydevbot
gxydevbot force-pushed the workflows/microbiome/mags-building branch from 2b4cc56 to 559d8ac Compare October 23, 2026 09:50
@bebatut

bebatut commented Oct 23, 2026

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Probably replaced by #1454 but need to check first that tool versions have been updated in the other PR

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gxydevbot force-pushed the workflows/microbiome/mags-building branch from 559d8ac to 21b94d1 Compare October 26, 2026 11:42
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There are new updates, they have been integrated to the PR, check the file diff.

@gxydevbot
gxydevbot force-pushed the workflows/microbiome/mags-building branch from 21b94d1 to 7c19812 Compare November 9, 2026 14:44
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There are new updates, they have been integrated to the PR, check the file diff.

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gxydevbot force-pushed the workflows/microbiome/mags-building branch from 7c19812 to 89be518 Compare November 13, 2026 02:24
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There are new updates, they have been integrated to the PR, check the file diff.

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3 participants