Issues

• Error in vignette execution

  help wanted
  hms-dbmi/scde#94 · Filter by author LeonHafner opened on Dec 5, 2024
  1

• could scde use in differencial expression transcripts analysis?

  hms-dbmi/scde#92 · Filter by author DamienTan opened on Jun 8, 2022

• ERROR encountered in building a model

  hms-dbmi/scde#90 · Filter by author ps120195 opened on Feb 14, 2022

• error in calculating models

  hms-dbmi/scde#89 · Filter by author jingjiai opened on Oct 26, 2021

• scde issue

  hms-dbmi/scde#88 · Filter by author mark0237 opened on May 27, 2021
  4

• ES/MEF cell dataset published by Islam et al

  hms-dbmi/scde#87 · Filter by author dalibor49 opened on Sep 1, 2020

• fisher.test error

  hms-dbmi/scde#86 · Filter by author marctormo opened on Jun 19, 2020

• How to get the baseMeanA and baseMeanB in result of scde.expression.difference()

  hms-dbmi/scde#84 · Filter by author lyqbiocc opened on Feb 29, 2020

• Naive questions

  hms-dbmi/scde#83 · Filter by author brianlamx opened on Jan 23, 2020

• last biocoductor version

  hms-dbmi/scde#82 · Filter by author dibbelab opened on Nov 12, 2019
  4

• Is there an equivalent pagoda.show.pathways() function for looking at clusters and not pathways

  hms-dbmi/scde#81 · Filter by author jpcartailler opened on Oct 23, 2019

• What is the meaning of zscore in the results of differentially expressed analysis?

  hms-dbmi/scde#79 · Filter by author AIBio opened on Aug 20, 2019
  4

• scde bioconductor version 2.10.0 still has flexmix problem!

  hms-dbmi/scde#76 · Filter by author tanpuekai opened on Nov 23, 2018
  2

• Computing the statistical significance of overdispersion

  hms-dbmi/scde#75 · Filter by author livnatje opened on Nov 21, 2018

• Error in checkSlotAssignment(object, name, value)

  hms-dbmi/scde#74 · Filter by author mirauta opened on Nov 7, 2018
  2

• incredible difficulty in installing 'scde' on R3.4.3 and R3.5.1

  hms-dbmi/scde#73 · Filter by author tanpuekai opened on Oct 27, 2018
  2

• using 10x data

  hms-dbmi/scde#72 · Filter by author batis2ta opened on Sep 25, 2018

• Cannot install scde in windows

  hms-dbmi/scde#71 · Filter by author alyosama opened on Sep 14, 2018

• regressing out confounders for differential expression

  hms-dbmi/scde#68 · Filter by author livnatje opened on May 15, 2018

• Normalized expression

  hms-dbmi/scde#67 · Filter by author livnatje opened on May 5, 2018

• Up- and down-regulated genes from which of the two groups?

  hms-dbmi/scde#66 · Filter by author mvalenzuelav opened on Apr 20, 2018
  2

• Effect Size or LogFC

  hms-dbmi/scde#65 · Filter by author ghost opened on Mar 30, 2018
  3

• Memory requirement

  hms-dbmi/scde#63 · Filter by author DesmondYuan opened on Mar 27, 2018
  1

• cde.error.models in batch

  hms-dbmi/scde#62 · Filter by author ghost opened on Mar 3, 2018
  2

• scde.expression.difference outputs when batch defined

  hms-dbmi/scde#61 · Filter by author ghost opened on Mar 3, 2018
  1