Issues

• GSvar: add test option for SSL certificate

  imgag/megSAP#570 · Filter by author marc-sturm opened on Oct 9, 2026
  1

  

• Edit processed sample window allows to change a project

  imgag/megSAP#569 · Filter by author ubuntolog opened on Oct 8, 2026

• megSAP/GSvar/GSvarServer: add support for .GSvar.gz

  imgag/megSAP#568 · Filter by author marc-sturm opened on Oct 7, 2026

• improve (lrGS) mosaic calling

  imgag/megSAP#567 · Filter by author leonschuetz opened on Oct 7, 2026

• Add more information about the GSvar client to the request headers

  imgag/megSAP#566 · Filter by author ubuntolog opened on Oct 5, 2026
  

• Investigate size difference between ONT and PacBio

  imgag/megSAP#565 · Filter by author leonschuetz opened on Sep 24, 2026

• Better automation of processes

  imgag/megSAP#563 · Filter by author ubuntolog opened on Sep 23, 2026

• LongReads: Use newer paraphase version for PacBio data

  imgag/megSAP#557 · Filter by author BeneKenobi opened on Sep 2, 2026

• mapping bwa single-reads

  imgag/megSAP#555 · Filter by author alex-seitz opened on Aug 27, 2026
  4

• LongReads: add mito SV calling

  imgag/megSAP#551 · Filter by author leonschuetz opened on Aug 10, 2026
  2

• KASP check

  imgag/megSAP#549 · Filter by author Ott-Alexander opened on Aug 5, 2026

• update PacBio tools

  imgag/megSAP#547 · Filter by author marc-sturm opened on Jul 29, 2026
  1

  

• Add RE BCLAF3

  imgag/megSAP#546 · Filter by author marc-sturm opened on Jul 28, 2026
  1

  

• Somatic Long-read Pipeline

  imgag/megSAP#542 · Filter by author Ott-Alexander opened on Jul 20, 2026

• add Pore-C pipeline

  imgag/megSAP#540 · Filter by author marc-sturm opened on Jul 17, 2026

• Add special calling for pseudogenes e.g. for STRC

  imgag/megSAP#536 · Filter by author marc-sturm opened on Jul 14, 2026
  3

  

• add script to transfer a processed sample from one GSvar/megSAP instance to another

  imgag/megSAP#534 · Filter by author marc-sturm opened on Jul 6, 2026

• LongReads: add methylation info to RE

  imgag/megSAP#532 · Filter by author leonschuetz opened on Jul 2, 2026

• Update megSAP/GSvar docu

  imgag/megSAP#530 · Filter by author marc-sturm opened on Jul 1, 2026

• Performance Somatic

  imgag/megSAP#528 · Filter by author Ott-Alexander opened on Jun 25, 2026

• refactor burden test

  imgag/megSAP#525 · Filter by author leonschuetz opened on Jun 18, 2026

• Apptainer command still uses singularity

  imgag/megSAP#522 · Filter by author caspargross opened on May 28, 2026
  1

• LongReads: integrate wf-human-variation

  imgag/megSAP#521 · Filter by author leonschuetz opened on May 21, 2026

• Questions for Illumina

  imgag/megSAP#519 · Filter by author leonschuetz opened on May 13, 2026
  1

• allow mixed multi/trio analyses

  imgag/megSAP#517 · Filter by author marc-sturm opened on Apr 27, 2026