Missing region.tss10k.txt

[vtwang]

In step 4 of RIVER in the README, generate_regions.m line 8 appears to be reading in a file called region.tss10k.txt. I was unable to find it in the preprocessed data download and also unsure how to generate the file from code in the repo.

I was also wondering why there is a for loop starting on line 21 as both region_tss.labels and region_tss.dist are scalers, not arrays.

[ipw012]

'region.tss10k.txt' is simply a list of 10kb away from TSS for all genes. You can easily see what it looks like based upon the m file.

That for loop was implemented to consider various genomic regions so that you can simply ignore that for loop here.