Issues

• Create package for APT

  enhancement
  jorvis/biocode#88 · Filter by author jorvis opened on Apr 17, 2026

• product info not printout in tbl

  bug
  jorvis/biocode#74 · Filter by author shuhailaMSR opened on Aug 26, 2021
  2

  

• Formatting Issue?

  bug
  jorvis/biocode#72 · Filter by author remiketchum opened on May 11, 2021
  2

  

• Incorrect parent features from convert_tRNAScanSE_to_gff3.pl

  jorvis/biocode#70 · Filter by author 14zac2 opened on Dec 28, 2020
  2

• Conda based install

  enhancement
  jorvis/biocode#65 · Filter by author nhartwic opened on Sep 27, 2019
  2

• [convert_genbank_to_gff3.py] key_error: locus_tag

  bug
  jorvis/biocode#60 · Filter by author Piplopp opened on May 13, 2019
  5

  

• Exclude mRNA features in bacterial TBL exports

  jorvis/biocode#56 · Filter by author jorvis opened on Jun 25, 2018

• convert_gff3_to_ncbi_tbl

  jorvis/biocode#54 · Filter by author bernt-matthias opened on Feb 13, 2018
  5

• Augustus conversion failing

  jorvis/biocode#51 · Filter by author jorvis opened on Jan 10, 2018
  5

  

• Script needed for assembly evaluation

  enhancement
  jorvis/biocode#36 · Filter by author jorvis opened on Jan 29, 2016
  1

• biocodeutils.py add error output mRNA ID

  jorvis/biocode#30 · Filter by author ktretina opened on Nov 20, 2014

• correct_gff_feature_order.pl misplacing ##FASTA

  jorvis/biocode#29 · Filter by author ktretina opened on Nov 20, 2014

• convert_gff3_to_gbk.py, convert sequences with no annotation

  jorvis/biocode#26 · Filter by author jonathancrabtree opened on Jul 15, 2014

• GFF3 validator

  enhancement
  jorvis/biocode#17 · Filter by author ktretina opened on Jun 13, 2014
  1

• convert_gff3_to_gbk.py with no embedded FASTA

  bug
  jorvis/biocode#15 · Filter by author ktretina opened on Jun 12, 2014

• Model UTRs explicitly

  enhancement
  jorvis/biocode#14 · Filter by author jorvis opened on Jun 5, 2014
  2

  

• Annotation parsing file output options

  enhancement
  jorvis/biocode#13 · Filter by author mchibucos opened on May 29, 2014

• The biothings module needs to support multiple parentage

  enhancement
  jorvis/biocode#12 · Filter by author jorvis opened on Mar 2, 2014

• Add motif predictions to parse_ergatis_euk_functional_pipeline.py

  jorvis/biocode#11 · Filter by author mchibucos opened on Feb 18, 2014

• gff/write_fasta_from_gff.pl mistranslates some Augustus -> GFF3 output

  bug
  jorvis/biocode#10 · Filter by author jorvis opened on Feb 13, 2014

• report_gff3_statistics.py unsupported operand type(s) error

  bug
  jorvis/biocode#9 · Filter by author mchibucos opened on Feb 7, 2014
  

• Needed: Speed-optimized FASTA statistics script

  enhancement
  jorvis/biocode#7 · Filter by author jorvis opened on Dec 29, 2013

• Needed: Speed-optimized FASTQ statistics script

  enhancement
  jorvis/biocode#6 · Filter by author jorvis opened on Dec 29, 2013
  1