TASK-5388 - Add AlphaMissense predictions - #698

Open

jtarraga wants to merge 115 commits into

Commits on Dec 18, 2023

lib: download polygenic scores (PGS), #TASK-5406, #TASK-5387
jtarraga
committed
278fdbd

Commits on Dec 19, 2023

lib: update the build command to support PGS data, #TASK-5407, #TASK-5387
jtarraga
committed
d327c47
lib: copy PGS version file from download to generated json directory, #TASK-5407, #TASK-5387
jtarraga
committed
fd6ac92
lib: update the load command to support PGS data, #TASK-5410, #TASK-5387
jtarraga
committed
53aa886

Commits on Dec 20, 2023

lib: update CellBase downloader to take into account the AlphaMissense predictions, #TASK-5418, #TASK-5388
jtarraga
committed
ecfee15

Commits on Dec 21, 2023

lib: update builder to build AlphaMissense predictions, #TASK-5419, #TASK-5388
jtarraga
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967d4cc

Commits on Dec 22, 2023

Commits on Jan 2, 2024

lib: add support for annotating using PGS, #TASK-5411, #TASK-5387
jtarraga
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314786d

Commits on Jan 3, 2024

Commits on Jan 5, 2024

Commits on Jan 9, 2024

Commits on Jan 10, 2024

Commits on Jan 11, 2024

Commits on Jan 12, 2024

Commits on Jan 17, 2024

lib: update Revel downloader, #TASK-5441, #TASK-5388
jtarraga
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e3e9e21
lib: update Revel builder, #TASK-5441, #TASK-5388
jtarraga
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a090053

Commits on Jan 21, 2024

download: gwas catalog fixes
imedina
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6346c97

Commits on Jan 29, 2024

lib: take into account the NumberFormatException, #TASK-5407, #TASK-5387
jtarraga
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d343315

Commits on Feb 2, 2024

lib: improve PGS builder, #TASK-5407, #TASK-5387
jtarraga
committed
268f591
lib: remove System.out in PGS builder, #TASK-5407, #TASK-5387
jtarraga
committed
5972c15

Commits on Feb 7, 2024

Commits on Mar 1, 2024

Merge branch 'TASK-5392' into TASK-5564
imedina
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19368e6
Update configuration.yml
imedina
committed
89264c2

Commits on Mar 7, 2024

Commits on Mar 8, 2024

Commits on Mar 22, 2024

lib: improve conservation downloader by updating versions from config file, adding log messages, removing hardcode filenames, sonnar issues,..., #TASK-5775, #TASK-5564
jtarraga
committed
f308f25

Commits on Mar 28, 2024

lib: update regulation download manager, and the configuration file, to take into account the version for miRBase and miRTarBase, #TASK-5775, #TASK-5564
jtarraga
committed
2e6e895

Commits on Apr 3, 2024

Commits on Apr 4, 2024

lib: fix Gwas Catalog builder for clinical variants, #TASK-5776, #TASK-5564
jtarraga
committed
df0f1e0

Commits on Apr 5, 2024

lib: refactor code by changing the DownloadProperties.URLProperties, #TASK-5775, #TASK-5564
jtarraga
committed
d4cba15

Commits on Apr 12, 2024

lib: update CellBase downloaders, #TASK-5775, #TASK-5564
jtarraga
committed
e18506b

Commits on Apr 15, 2024

core: update CellBase configuration file, #TASK-5775, #TASK-5564
jtarraga
committed
69a58bf

Commits on Apr 18, 2024

Commits on Apr 19, 2024

Commits on Apr 22, 2024

Commits on Apr 23, 2024

Commits on Apr 24, 2024

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Commits on Apr 26, 2024

Commits on Apr 29, 2024

Commits on May 7, 2024

Commits on May 8, 2024

Commits on May 10, 2024