Public Health Alliance for Genomic Epidemiology
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hAMRonization
hAMRonization PublicParse multiple Antimicrobial Resistance Analysis Reports into a common data structure
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pipeline-resources
pipeline-resources PublicBioinformatics Pipeline and Visualization resources
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sars-cov-2-contextual-data-specification
sars-cov-2-contextual-data-specification PublicCollection template and associated materials for SARS-CoV-2 metadata
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hAMRonization-workflow
hAMRonization-workflow PublicHarmonization of AMR predictor tool outputs
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Repositories
- hAMRonization Public
Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure
- wastewater-guidance Public
- genotyping-specification Public
A data specification for harmonizing microbial typing contextual data. The specification provides standardized (ontology-based) fields and terms which can be implemented in tooling, with supporting guidance.
- primer-schemes-website Public Forked from ChrisgKent/pha4ge-primerschemes-frontend
Browse PHA4GE primer schemes
- wastewater-contextual-data-specification Public Forked from cidgoh/Wastewater_Contextual_Data_Specification
A data specification for harmonizing Wastewater pathogen genomics contextual data. The specification provides standardized (ontology-based) fields and terms which are implemented via metadata template(s), supported by field and reference guides as well as different curation and new term request SOPs.
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