expPipeline

MATLAB analysis pipeline for electrophysiology experiments in the Coen Lab. Includes figure generation scripts, GLM fitting, Kilosort integration, psychometric curve fitting, and spatial inactivation analysis.

Structure

• +fig1/ through +fig5/, +figS/ — Figure generation scripts
• +fit/ — GLM fitting, psychometric curves, drift-diffusion models
• +kil/ — Kilosort/electrophysiology utilities
• +plt/ — Plotting helpers
• +prc/ — Data processing and experiment definitions
• @spatialAnalysis/ — Spatial inactivation analysis class (16 methods)
• helper/ — Flat brain cortex mapping, probe configs

Requirements

• MATLAB (with Optimization Toolbox)
• Data paths configured in masterPaths.m

Note

This repository is archived and is no longer actively maintained.