Issues

• [TODO] Checks if the tensor’s strides follow row-major order (critical for performance).

  sdkfjuecsec/Protenix#13 · Filter by author sdkfjuecsec opened on Mar 10, 2026

• [TODO] 2025-11-5: study new features introduced in Protenix v0.7.0

  sdkfjuecsec/Protenix#12 · Filter by author sdkfjuecsec opened on Nov 5, 2025

• TODO list

  sdkfjuecsec/Protenix#10 · Filter by author sdkfjuecsec opened on Aug 28, 2025
  2

• TODO: After adding the "cuequivariance" option, if you want to use the CPU version of Protenix to predict a structure, you may need to modify some parameters

  sdkfjuecsec/Protenix#9 · Filter by author sdkfjuecsec opened on Aug 28, 2025

• TODO: The name ValueMaybeNone is confusing.

  sdkfjuecsec/Protenix#8 · Filter by author sdkfjuecsec opened on Aug 27, 2025

• useful resources

  sdkfjuecsec/Protenix#7 · Filter by author sdkfjuecsec opened on Aug 19, 2025

• TODO: Symbol Nomenclature for Glycans (SNFG)

  sdkfjuecsec/Protenix#6 · Filter by author sdkfjuecsec opened on Aug 13, 2025

• study each detail of the file examples/7pzb.pdb

  sdkfjuecsec/Protenix#5 · Filter by author sdkfjuecsec opened on Jul 28, 2025
  1

• TODO: Questions that arise when studying how to convert a PDB file to a CIF file

  sdkfjuecsec/Protenix#4 · Filter by author sdkfjuecsec opened on Jul 24, 2025
  4

• TODO: study the implementation of rdkit.Chem.AllChem.EmbedMolecule

  sdkfjuecsec/Protenix#2 · Filter by author sdkfjuecsec opened on Jul 21, 2025

• GPU MODE - (Mini) Competition #3. AlphaFold’s Triangle Multiplicative Update

  sdkfjuecsec/Protenix#1 · Filter by author sdkfjuecsec opened on Jun 30, 2025
  2