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single-cell-multi-omics

Here are 5 public repositories matching this topic...

ZJUFanLab / SpaTrio

gene-regulation spatial-transcriptomics cell-cell-communication spatial-omics single-cell-multi-omics

Updated Dec 15, 2024
Python

Eggong / OTMODE

OTMODE: An Optimal Transport-Based Framework for Differential Feature Identification in Single-Cell Multi-Omics

cell-type-annotation single-cell-multi-omics optimal-transport-theory differential-feature-detection

Updated Jan 21, 2026
Jupyter Notebook

deepomicslab / SCOIT

SCOIT is an implementation of a probabilistic tensor decomposition framework for single-cell multi-omics data integration.

single-cell tensor-decomposition single-cell-omics single-cell-multiomics single-cell-multi-omics

Updated Dec 12, 2024
Python

jumphone / InferLoop

InferLoop: leveraging single-cell chromatin accessibility for the signal of chromatin loop

chromatin-structure scatac-seq single-cell-3d-genome-structure single-cell-multi-omics spatial-chromatin-accessibility single-cell-chromatin-accessibility

Updated Jun 12, 2023
R

biochengd / DUET-seq

DUET-seq (Droplet-based Unified Epigenome and Transcriptome sequencing)

single-cell-multi-omics scatac-seq-analysis

Updated Aug 24, 2026
Jupyter Notebook

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