Add top-level Jekyll _config.yml file pointing to public directory:
_config.yml
safe: false auto: false server: false source: ./public destination: ./_site future: true lsi: false pygments: true markdown: maruku
This will copy all of your files from ./public to ./_site, which GitHub will route to your project url:
./public
./_site
http://username.github.com/project-name http://username.github.com/project-name/about http://username.github.com/project-name/javascripts/application.js
That's clean :)
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