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Pull requests: loculus-project/loculus

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Pull requests list

feat(raw-reads-processing): use the deacon Python bindings instead of the CLI server preview Triggers a deployment to argocd
#7202 opened Aug 28, 2026 by corneliusroemer-agent Collaborator • Draft
1
fix(e2e): one helper for the reload-until-appears waits, and don't let a transient reload error abort them
#7201 opened Aug 28, 2026 by corneliusroemer-agent Collaborator Loading…
8
fix(website): error when a metadata file is dropped into the sequence field preview Triggers a deployment to argocd website Tasks related to the web application
#7200 opened Aug 28, 2026 by corneliusroemer-agent Collaborator Loading…
1
6
fix(deployment): mirror kubernetes-secret-generator chart via GHCR deployment Code changes targetting the deployment infrastructure
#7199 opened Aug 28, 2026 by corneliusroemer-agent Collaborator Loading…
5
fix(e2e): Eliminate race condition by asserting row-count=1, refactor shared logic tests Test related issues
#7198 opened Aug 28, 2026 by corneliusroemer Contributor Loading…
7
fix(ci): make the Flyway migration check actually check something
#7194 opened Aug 27, 2026 by corneliusroemer-agent Collaborator • Draft
fix(ingest): put the metadata header in every submission batch deployment Code changes targetting the deployment infrastructure ingest Ingest pipeline
#7193 opened Aug 27, 2026 by corneliusroemer-agent Collaborator Loading…
6
feat(preprocessing): process a batch's raw read files concurrently deployment Code changes targetting the deployment infrastructure preprocessing Issues related to the preprocessing component preview Triggers a deployment to argocd
#7190 opened Aug 26, 2026 by corneliusroemer-agent Collaborator • Draft
1
feat(raw-reads-processing): validate against a warm readtools JVM preview Triggers a deployment to argocd
#7188 opened Aug 26, 2026 by corneliusroemer-agent Collaborator • Draft
1
fix(ingest): report every failed submit batch, not just the last ingest Ingest pipeline
#7184 opened Aug 26, 2026 by corneliusroemer-agent Collaborator • Draft
feat!(website): also pass header in inputFields to ensure additional,… deployment Code changes targetting the deployment infrastructure preview Triggers a deployment to argocd website Tasks related to the web application
#7166 opened Aug 26, 2026 by anna-parker Contributor Loading…
1 of 3 tasks
4
fix(backend): stop the update-tracker triggers going quadratic on bulk inserts backend related to the loculus backend component update_db_schema
#7165 opened Aug 25, 2026 by corneliusroemer-agent Collaborator • Draft
1
test(backend): improve shared resource failure logging by refactoring from launcher listener to JUnit extension backend related to the loculus backend component
#7163 opened Aug 25, 2026 by corneliusroemer-agent Collaborator Loading…
16
test(backend): stop re-stubbing DateProvider while a released-data stream is in flight backend related to the loculus backend component
#7161 opened Aug 25, 2026 by corneliusroemer-agent Collaborator • Draft
ci(backend): make backend-test hangs diagnosable backend related to the loculus backend component
#7154 opened Aug 25, 2026 by corneliusroemer-agent Collaborator • Draft
14
Compress submission uploads with zstd in the browser website Tasks related to the web application
#7152 opened Aug 24, 2026 by corneliusroemer-agent Collaborator • Draft
chore(ci): make GitHub workflow job names unique and informative github_actions Pull requests that update GitHub Actions code
#7150 opened Aug 24, 2026 by corneliusroemer Contributor • Draft
fix(ingest): don't retry ingest jobs, submit in smaller batches, raise time limit deployment Code changes targetting the deployment infrastructure ingest Ingest pipeline
#7146 opened Aug 24, 2026 by corneliusroemer-agent Collaborator • Draft
4
feat(backend): Generate db migrations from exposed table definitions backend related to the loculus backend component
#7141 opened Aug 24, 2026 by tombch Collaborator • Draft
3 tasks
test(backend): assert Exposed declarations match the migrated schema backend related to the loculus backend component
#7139 opened Aug 24, 2026 by corneliusroemer-agent Collaborator • Draft
1
feat!(backend): prevent db state divergence between truth and code backend related to the loculus backend component update_db_schema
#7138 opened Aug 24, 2026 by anna-parker Contributor • Draft
2 of 3 tasks
1
14
fix(backend): discard processed data whose sequence entry was edited backend related to the loculus backend component
#7137 opened Aug 23, 2026 by corneliusroemer-agent Collaborator • Draft
1
12
doc(kb): add spooling investigation writeup
#7134 opened Aug 23, 2026 by clonder Contributor Loading…
2 of 3 tasks
6
fix(website): Fix applying file mappings for compressed metadata files website Tasks related to the web application
#7119 opened Aug 20, 2026 by tombch Collaborator Loading…
3 tasks
1
9
[Mirror] Kubernetes/securitycontexts deployment Code changes targetting the deployment infrastructure
#7117 opened Aug 19, 2026 by chaoran-chen Member Loading…
9
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