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Add prepro function that validates submitted bioproject, biosample and raw reads a valid
depositionrelated to ENA/INSDC depositionrelated to ENA/INSDC depositionpreprocessingIssues related to the preprocessing componentIssues related to the preprocessing componentStatus: Open.#7250 In loculus-project/loculus;Submission forms that have been populated could prompt before people exit them
featureFeature proposalFeature proposalwebsiteTasks related to the web applicationTasks related to the web applicationStatus: Open.#7248 In loculus-project/loculus;Prohibit seqs with INSDC accessions in prepro (except for ingest)
featureFeature proposalFeature proposalingestIngest pipelineIngest pipelinepreprocessingIssues related to the preprocessing componentIssues related to the preprocessing componentStatus: Open.#7247 In loculus-project/loculus;deposition: correctly handle case where only raw reads are updated not consensus sequence
depositionrelated to ENA/INSDC depositionrelated to ENA/INSDC depositionStatus: Open.#7245 In loculus-project/loculus;rename SILO to RhyDB
deploymentCode changes targetting the deployment infrastructureCode changes targetting the deployment infrastructurerefactoringCode requires refactoringCode requires refactoringsilo/LAPISupstream silo/LAPIS issueupstream silo/LAPIS issueStatus: Open.#7206 In loculus-project/loculus;Provide helpful error message when user uploads interleaved fastq
preprocessingIssues related to the preprocessing componentIssues related to the preprocessing componentwebsiteTasks related to the web applicationTasks related to the web applicationStatus: Open.#7203 In loculus-project/loculus;Error when someone drops a .tsv file (or similar non fasta-like) into sequence box
websiteTasks related to the web applicationTasks related to the web applicationStatus: Open.#7197 In loculus-project/loculus;Previous versions of a sequence continue to have
REVOKEDversion status after the latest version was un-revokedbackendrelated to the loculus backend componentrelated to the loculus backend componentLow priorityFor issues that are lower priority than averageFor issues that are lower priority than averagewebsiteTasks related to the web applicationTasks related to the web applicationStatus: Open.#7192 In loculus-project/loculus;Validate entire raw-read files
depositionrelated to ENA/INSDC depositionrelated to ENA/INSDC depositionpreprocessingIssues related to the preprocessing componentIssues related to the preprocessing componentStatus: Open.#7187 In loculus-project/loculus;Review page requests the full sequence data via
get-data-to-editfor every card, ~32 MB per page load for mpoxbackendrelated to the loculus backend componentrelated to the loculus backend componentwebsiteTasks related to the web applicationTasks related to the web applicationStatus: Open.#7185 In loculus-project/loculus;When clicking on "Submit sequences" button from /organism/submission/groupid/review the groupid is changed
bugSomething isn't workingSomething isn't workingwebsiteTasks related to the web applicationTasks related to the web applicationStatus: Open.#7172 In loculus-project/loculus;Add diff view for revisions on review page
featureFeature proposalFeature proposalwebsiteTasks related to the web applicationTasks related to the web applicationStatus: Open.#7171 In loculus-project/loculus;