De novo clustering of long transcript reads into genes
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Oct 2, 2026 - Python
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pacbio-iso-seq
Here are 15 public repositories matching this topic...
A Python library to visualize and analyze long-read transcriptomes
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Jan 19, 2026 - Jupyter Notebook
De novo construction of isoforms from long-read data
transcriptomics oxford-nanopore bioinformatics-tool reference-free pacbio-iso-seq transcript-reconstruction annotation-free
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Sep 9, 2026 - Rust
Clair3-RNA - a long-read small variant caller for RNA sequencing data
rna-seq deep-learning nanopore rna variant-calling rna-editing rna-seq-pipeline ont long-read-sequencing pacbio-iso-seq
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Apr 16, 2026 - Python
De novo clustering of long transcript reads into genes
bioinformatics clustering transcriptomics oxford-nanopore reference-free pacbio-iso-seq annotation-free
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Dec 15, 2025 - Rust
Long RNA-seq analysis workflow
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Oct 13, 2025 - Python
A collection of scripts for our PacBio paper
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Nov 30, 2025 - C++
A collection of scripts for our PacBio paper
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Feb 15, 2021 - C++
A package to deal with PacBio transcriptomics data
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Feb 19, 2026 - Python
A Snakemake pipeline to go from raw .subreads.bam PacBio Iso-Seq to assembled mRNA isoforms (FASTA format)
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Jul 29, 2022 - Python
Genome assembly steps (Haliotis asinina)
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Jul 31, 2024
Iso-seq and Kallisto integration
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Jan 29, 2020 - Python
Process PacBio Sequel and Sequel II subread BAMs into CCS FASTQ files
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Sep 15, 2021 - Python
Build highly accurate transcripts from long-read RNA data
bioinformatics rna-seq bioinformatics-pipeline tgs rnaseq rna-seq-data pacbioreadsconnection sequencing-rna rna-seq-pipeline ont bioinformatics-tool pacbio-iso-seq
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Jul 30, 2020 - Python
Inter-sample analysis of SQANTI classifications
bioinformatics rna-seq liftover tgs pacbio rna-sequencing genome-browser pacbio-data bioinformatics-tool bioinformatics-visualization pacbio-iso-seq sqanti
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Aug 12, 2020 - R
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